211D Dna date Jun 13, 1995
title The Crystal And Molecular Structure Of A New Z-Dna Crystal F D[Cgt(2-Nh2-A) Cg] And Its Platinated Derivative
authors G.N.Parkinson, G.M.Arvantis, L.Lessinger, S.L.Ginell, R.Jones, B. H.M.Berman
compound source
Molecule: Dna (5'-D(Cpgptp(1ap)Pcp(Pt(Nh3)3)G)-3')
Chain: A
Engineered: Yes
Synthetic: Yes
symmetry Space Group: P 32 2 1
R_factor 0.170 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
25.193 25.193 38.948 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand 1AP, PTN, SPM enzyme
Primary referenceCrystal and molecular structure of a new Z-DNA crystal form: d[CGT(2-NH2-A)CG] and its platinated derivative., Parkinson GN, Arvanitis GM, Lessinger L, Ginell SL, Jones R, Gaffney B, Berman HM, Biochemistry 1995 Nov 28;34(47):15487-95. PMID:7492550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8 Kb) [Save to disk]
  • Biological Unit Coordinates (211d.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 211D
  • CSU: Contacts of Structural Units for 211D
  • Likely Quarternary Molecular Structure file(s) for 211D
  • Structure Factors (36 Kb)
  • Retrieve 211D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 211D from S2C, [Save to disk]
  • Re-refined 211d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 211D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 211D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 211D, from MSDmotif at EBI
  • Fold representative 211d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [211d_A] [211d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 211D
  • Community annotation for 211D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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