2A2D Transferase date Jun 22, 2005
title X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine
authors J.B.Thoden, H.M.Holden
compound source
Molecule: N-Acetylgalactosamine Kinase
Chain: A
Synonym: Galnac Kinase, Galactokinase 2
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Galk2, Gk2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Hms174(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 65
R_factor 0.203 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.100 119.100 65.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand A2G, ANP, MN enzyme Transferase E.C.2.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe molecular architecture of human N-acetyl galactosamine kinase., Thoden JB, Holden HM, J Biol Chem 2005 Jul 8;. PMID:16006554
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2a2d.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 2A2D
  • CSU: Contacts of Structural Units for 2A2D
  • Likely Quarternary Molecular Structure file(s) for 2A2D
  • Structure Factors (262 Kb)
  • Retrieve 2A2D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A2D from S2C, [Save to disk]
  • Re-refined 2a2d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A2D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A2D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2A2D, from MSDmotif at EBI
  • Fold representative 2a2d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a2d] [2a2d_A]
  • SWISS-PROT database: [Q01415]
  • Domain organization of [GALK2_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2A2D with the sequences similar proteins can be viewed for 2A2D's classification [GALK2_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [GALK2_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2A2D
  • Community annotation for 2A2D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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