2A4X Crystal Structure Of Mitomycin C-Binding Protein Complexed with Metal-Free Bleomycin A2 date
authors Danshiitsoodol, N., Pinho, C.A.de., Matoba, Y., Kumagai, T., Sugiyama, M.
compound source
R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand BLM enzyme
Primary referenceThe Mitomycin C (MMC)-binding Protein from MMC-producing Microorganisms Protects from the Lethal Effect of Bleomycin: Crystallographic Analysis to Elucidate the Binding Mode of the Antibiotic to the Protein., Danshiitsoodol N, de Pinho CA, Matoba Y, Kumagai T, Sugiyama M, J Mol Biol. 2006 Jul 7;360(2):398-408. Epub 2006 May 22. PMID:16756991
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (2a4x.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2A4X
  • CSU: Contacts of Structural Units for 2A4X
  • Likely Quarternary Molecular Structure file(s) for 2A4X
  • Retrieve 2A4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A4X from S2C, [Save to disk]
  • View 2A4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A4X
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2A4X, from MSDmotif at EBI
  • Fold representative 2a4x from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a4x_B] [2a4x_A] [2a4x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2A4X
  • Community annotation for 2A4X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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