2A62 Cell Adhesion date Jul 01, 2005
title Crystal Structure Of Mouse Cadherin-8 Ec1-3
authors S.D.Patel, C.Ciatto, C.P.Chen, F.Bahna, N.Arkus, I.Schieren, T.M.J B.Honig, S.R.Price, L.Shapiro
compound source
Molecule: Cadherin-8
Chain: A
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cdh8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 2 2
R_factor 0.271 R_Free 0.346
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.818 75.818 233.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.50 Å
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceType II cadherin ectodomain structures: implications for classical cadherin specificity., Patel SD, Ciatto C, Chen CP, Bahna F, Rajebhosale M, Arkus N, Schieren I, Jessell TM, Honig B, Price SR, Shapiro L, Cell. 2006 Mar 24;124(6):1255-68. PMID:16564015
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2a62.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 2A62
  • CSU: Contacts of Structural Units for 2A62
  • Likely Quarternary Molecular Structure file(s) for 2A62
  • Structure Factors (42 Kb)
  • Retrieve 2A62 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A62 from S2C, [Save to disk]
  • Re-refined 2a62 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2A62 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2A62
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A62, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a62_A] [2a62]
  • SWISS-PROT database: [P97291]
  • Domain organization of [CADH8_MOUSE] by SWISSPFAM
  • Domain found in 2A62: [CA ] by SMART
    • Other resources with information on 2A62
  • Community annotation for 2A62 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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