2A6O Transcription Dna date Jul 03, 2005
title Crystal Structure Of The Ishp608 Transposase In Complex With Dna
authors D.R.Ronning, C.Guynet, B.Ton-Hoang, Z.N.Perez, R.Ghirlando, M.Cha F.Dyda
compound source
Molecule: 5'-D(Cpcpcpcptpapgpcptptptpapgpcpt Gpgpgpa)-3';
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Ishp608 Transposase
Chain: A, B
Engineered: Yes

Organism_scientific: Helicobacter Pylori
Organism_taxid: 210
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdr32
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.333 71.132 76.746 90.00 94.44 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceActive site sharing and subterminal hairpin recognition in a new class of DNA transposases., Ronning DR, Guynet C, Ton-Hoang B, Perez ZN, Ghirlando R, Chandler M, Dyda F, Mol Cell 2005 Oct 7;20(1):143-54. PMID:16209952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2a6o.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 2A6O
  • Likely Quarternary Molecular Structure file(s) for 2A6O
  • Retrieve 2A6O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A6O from S2C, [Save to disk]
  • View 2A6O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A6O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2A6O, from MSDmotif at EBI
  • Fold representative 2a6o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a6o] [2a6o_B] [2a6o_A] [2a6o_D] [2a6o_C]
  • SWISS-PROT database: [Q933Z0]
  • Domain organization of [Q933Z0_HELPY] by SWISSPFAM
  • Domain found in 2A6O: [Y1_Tnp ] by SMART
  • Other resources with information on 2A6O
  • Community annotation for 2A6O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science