2A83 Immune System date Jul 07, 2005
title Crystal Structure Of Hla-B2705 Complexed With The Glucagon (Gr) Peptide (Residues 412-420)
authors C.Ruckert, M.T.Fiorillo, B.Loll, R.Moretti, J.Biesiadka, W.Saenge A.Ziegler, R.Sorrentino, B.Uchanska-Ziegler
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-27 Alph
Chain: A
Fragment: Extracellular Domain, Residues 25-300
Synonym: Mhc Class I Antigen B27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-B, Hlab
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B
Fragment: Residues 21-119
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: The Glucagon Receptor (Gr) Peptide
Chain: C
Fragment: Residues 412-420
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Human)
symmetry Space Group: P 1 21 1
R_factor 0.126 R_Free 0.150
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.982 82.083 65.316 90.00 108.73 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceConformational dimorphism of self-peptides and molecular mimicry in a disease-associated HLA-B27 subtype., Ruckert C, Fiorillo MT, Loll B, Moretti R, Biesiadka J, Saenger W, Ziegler A, Sorrentino R, Uchanska-Ziegler B, J Biol Chem. 2006 Jan 27;281(4):2306-16. Epub 2005 Oct 12. PMID:16221670
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (2a83.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 2A83
  • CSU: Contacts of Structural Units for 2A83
  • Likely Quarternary Molecular Structure file(s) for 2A83
  • Structure Factors (746 Kb)
  • Retrieve 2A83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A83 from S2C, [Save to disk]
  • Re-refined 2a83 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A83 in 3D
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  • Visual 3D analysis of 2A83
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2A83, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a83_A] [2a83_B] [2a83_C] [2a83]
  • SWISS-PROT database: [P03989] [P61769]
  • Domain organization of [1B27_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 2A83: [IGc1 ] by SMART
  • Other resources with information on 2A83
  • Community annotation for 2A83 at PDBWiki (http://pdbwiki.org)
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