2A8H Hydrolase date Jul 08, 2005
title Crystal Structure Of Catalytic Domain Of Tace With Thiomorpholine Sulfonamide Hydroxamate Inhibitor
authors J.I.Levin, J.M.Chen, L.M.Laakso, M.Du, J.Schmid, W.Xu, T.Cummons, J.Xu, G.Jin, D.Barone, J.S.Skotnicki
compound source
Molecule: Adam 17
Chain: A, B
Fragment: Catalytic Domain
Synonym: A Disintegrin And Metalloproteinase Domain 17, Tnf-Alpha Converting Enzyme, Tnf-Alpha Convertase, Snake Venom-Like Protease, Cd156b Antigen;
Ec: 3.4.24.86
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Adam17, Csvp, Tace
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.367 59.209 198.011 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 4NH, ZN BindingDB enzyme Hydrolase E.C.3.4.24.86 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAcetylenic TACE inhibitors. Part 3: Thiomorpholine sulfonamide hydroxamates., Levin JI, Chen JM, Laakso LM, Du M, Schmid J, Xu W, Cummons T, Xu J, Jin G, Barone D, Skotnicki JS, Bioorg Med Chem Lett. 2006 Mar 15;16(6):1605-9. Epub 2006 Jan 19. PMID:16426848
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (2a8h.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (2a8h.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2A8H
  • CSU: Contacts of Structural Units for 2A8H
  • Likely Quarternary Molecular Structure file(s) for 2A8H
  • Structure Factors (148 Kb)
  • Retrieve 2A8H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2A8H from S2C, [Save to disk]
  • Re-refined 2a8h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2A8H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2A8H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2A8H, from MSDmotif at EBI
  • Fold representative 2a8h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2a8h_B] [2a8h_A] [2a8h]
  • SWISS-PROT database: [P78536]
  • Domain organization of [ADA17_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2A8H with the sequences similar proteins can be viewed for 2A8H's classification [ADA17_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ADA17_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2A8H
  • Community annotation for 2A8H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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