2AA5 Transcription date Jul 13, 2005
title Mineralocorticoid Receptor With Bound Progesterone
authors R.K.Bledsoe, K.P.Madauss, J.A.Holt, C.J.Apolito, M.H.Lambert, K.H.Pearce, T.B.Stanley, E.L.Stewart, R.P.Trump, T.M.Willson, S.P.Williams
compound source
Molecule: Mineralocorticoid Receptor
Chain: A, B
Fragment: Ligand Binding Domain
Synonym: Mr
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr3c2, Mcr, Mlr
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis Gst
symmetry Space Group: P 21 21 21
R_factor 0.220 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.164 89.394 172.204 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand STR BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA ligand-mediated hydrogen bond network required for the activation of the mineralocorticoid receptor., Bledsoe RK, Madauss KP, Holt JA, Apolito CJ, Lambert MH, Pearce KH, Stanley TB, Stewart EL, Trump RP, Willson TM, Williams SP, J Biol Chem 2005 Jun 20;. PMID:15967794
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2aa5.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2aa5.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2AA5
  • CSU: Contacts of Structural Units for 2AA5
  • Likely Quarternary Molecular Structure file(s) for 2AA5
  • Structure Factors (277 Kb)
  • Retrieve 2AA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AA5 from S2C, [Save to disk]
  • Re-refined 2aa5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AA5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AA5, from MSDmotif at EBI
  • Fold representative 2aa5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aa5_A] [2aa5] [2aa5_B]
  • SWISS-PROT database: [P08235]
  • Domain organization of [MCR_HUMAN] by SWISSPFAM
  • Domain found in 2AA5: [HOLI ] by SMART
  • Alignments of the sequence of 2AA5 with the sequences similar proteins can be viewed for 2AA5's classification [MCR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MCR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2AA5
  • Community annotation for 2AA5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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