2AAR Ribosome date Jul 14, 2005
title Structure Of Trigger Factor Binding Domain In Biologically H Complex With Eubacterial Ribosome.
authors D.Baram, E.Pyetan, A.Sittner, T.Auerbach-Nevo, A.Bashan, A.Yonath
compound source
Molecule: 23s Ribosomal Rna
Chain
Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: 50s Ribosomal Protein L23
Chain: R

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: 50s Ribosomal Protein L29
Chain: W

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299

Molecule: Trigger Factor
Chain: 7
Fragment: N-Terminal Domain
Synonym: Tf

Organism_scientific: Deinococcus Radiodurans
Organism_taxid: 1299
symmetry Space Group: I 2 2 2
R_factor 0.251 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.386 407.063 692.746 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
7


R


W


Primary referenceStructure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome reveals its chaperone action., Baram D, Pyetan E, Sittner A, Auerbach-Nevo T, Bashan A, Yonath A, Proc Natl Acad Sci U S A 2005 Aug 23;102(34):12017-22. Epub 2005 Aug 9. PMID:16091460
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1031 Kb) [Save to disk]
  • Biological Unit Coordinates (2aar.pdb1.gz) 1026 Kb
  • CSU: Contacts of Structural Units for 2AAR
  • Likely Quarternary Molecular Structure file(s) for 2AAR
  • Structure Factors (2867 Kb)
  • Retrieve 2AAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AAR from S2C, [Save to disk]
  • View 2AAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AAR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AAR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aar_W] [2aar] [2aar_7] [2aar_0] [2aar_R]
  • SWISS-PROT database: [Q9RXK0] [Q9RXJ4] [Q9RT21]
  • Domain organization of [RL23_DEIRA] [RL29_DEIRA] [TIG_DEIRA] by SWISSPFAM
  • Other resources with information on 2AAR
  • Community annotation for 2AAR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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