2AC0 Apoptosis Dna date Jul 18, 2005
title Structural Basis Of Dna Recognition By P53 Tetramers (Complex I)
authors M.Kitayner, H.Rozenberg, N.Kessler, D.Rabinovich, Z.Shakked
compound source
Molecule: 5'-D(Cpgpgpgpcpaptpgpcpcpcpg)-3'
Chain: E, F, G, H
Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Engineered: Yes
Synthetic: Yes

Molecule: Cellular Tumor Antigen P53
Chain: A, B, C, D
Fragment: Residues 94-293
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet27b
symmetry Space Group: P 1
R_factor 0.153 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.439 58.146 77.539 82.93 87.99 73.60
method X-Ray Diffractionresolution 1.80 Å
ligand ZN enzyme
Primary referenceStructural basis of DNA recognition by p53 tetramers., Kitayner M, Rozenberg H, Kessler N, Rabinovich D, Shaulov L, Haran TE, Shakked Z, Mol Cell. 2006 Jun 23;22(6):741-53. PMID:16793544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (172 Kb) [Save to disk]
  • Biological Unit Coordinates (2ac0.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 2AC0
  • CSU: Contacts of Structural Units for 2AC0
  • Likely Quarternary Molecular Structure file(s) for 2AC0
  • Structure Factors (1302 Kb)
  • Retrieve 2AC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AC0 from S2C, [Save to disk]
  • Re-refined 2ac0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AC0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AC0, from MSDmotif at EBI
  • Fold representative 2ac0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ac0_D] [2ac0_H] [2ac0] [2ac0_E] [2ac0_A] [2ac0_G] [2ac0_F] [2ac0_B] [2ac0_C]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Other resources with information on 2AC0
  • Community annotation for 2AC0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science