2AEI Hydrolase date Jul 22, 2005
title Crystal Structure Of A Ternary Complex Of Factor Viiatissue And 2-[[6-[3-(Aminoiminomethyl)Phenoxy]-3,5-Difluro-4-[(1-M Phenylpropyl)Amino]-2-Pyridinyl]Oxy]-Benzoic Acid
authors M.Adler, M.Whitlow
compound source
Molecule: Coagulation Factor Vii
Chain: L
Fragment: Light Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Kidney

Molecule: Coagulation Factor Vii
Chain: H
Fragment: Heavy Chain
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Kidney

Molecule: Tissue Factor
Chain: T
Fragment: Residues 33-243
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
symmetry Space Group: P 21 21 21
R_factor 0.199 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.215 80.496 125.936 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand 03R, CA, CAC, CGU enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Primary referenceThe discovery of fluoropyridine-based inhibitors of the Factor VIIa/TF complex., Kohrt JT, Filipski KJ, Cody WL, Cai C, Dudley DA, Van Huis CA, Willardsen JA, Rapundalo ST, Saiya-Cork K, Leadley RJ, Narasimhan L, Zhang E, Whitlow M, Adler M, McLean K, Chou YL, McKnight C, Arnaiz DO, Shaw KJ, Light DR, Edmunds JJ, Bioorg Med Chem Lett. 2005 Nov 1;15(21):4752-6. PMID:16125385
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (2aei.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 2AEI
  • CSU: Contacts of Structural Units for 2AEI
  • Likely Quarternary Molecular Structure file(s) for 2AEI
  • Structure Factors (147 Kb)
  • Retrieve 2AEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AEI from S2C, [Save to disk]
  • Re-refined 2aei structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AEI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AEI, from MSDmotif at EBI
  • Fold representative 2aei from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aei_H] [2aei] [2aei_L] [2aei_T]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 2AEI: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 2AEI
  • Community annotation for 2AEI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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