2AF2 Oxidoreductase date Jul 25, 2005
title Solution Structure Of Disulfide Reduced And Copper Depleted Human Superoxide Dismutase
authors L.Banci, I.Bertini, F.Cantini, N.D'Amelio, E.Gaggelli, Structural Proteomics In Europe (Spine)
compound source
Molecule: Superoxide Dismutase [Cu-Zn]
Chain: A, B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sod1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Topp1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbr322
methodSolution NMR
ligand ZN enzyme Oxidoreductase E.C. BRENDA
A, B
  • superoxide dismutase activit...
  • protein binding
  • anterograde axonal transport...
  • retrograde axonal transport

  • Primary referenceHuman sod1 before harboring the catalytic metal: Solution structure of copper depleted, disulfide reduced form., Banci L, Bertini I, Cantini F, D'Amelio N, Gaggelli E, J Biol Chem. 2005 Nov 14;. PMID:16291742
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2222 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2AF2
  • CSU: Contacts of Structural Units for 2AF2
  • Original NMR restraints for 2AF2 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2AF2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AF2 from S2C, [Save to disk]
  • View 2AF2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AF2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AF2, from MSDmotif at EBI
  • Fold representative 2af2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2af2_B] [2af2] [2af2_A]
  • SWISS-PROT database: [P00441]
  • Domain organization of [SODC_HUMAN] by SWISSPFAM
  • Other resources with information on 2AF2
  • Community annotation for 2AF2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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