2AGQ	Transferase Dna	date	Jul 27, 2005
title	Fidelity Of Dpo4: Effect Of Metal Ions, Nucleotide Selection Pyrophosphorolysis
authors	H.Ling, W.Yang
compound		source
Molecule: 5'-D(Gpgpcptpapcpapgpgpapcptp(Doc))- Chain: B Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized
Molecule: 5'-D(Tpcpaptpgpapgptpcpcptpgptpapg 3'; Chain: C Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized
Molecule: Dna Polymerase Iv Chain: A Synonym: Pol Iv Ec: 2.7.7.7 Engineered: Yes		Organism_scientific: Sulfolobus Solfataricus Organism_taxid: 2287 Gene: Dbh, Dpo4 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 21 21 2	R_factor 0.227 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.101 103.009 52.399 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CA, DOC, DTP, MG	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis., Vaisman A, Ling H, Woodgate R, Yang W, EMBO J 2005 Sep 7;24(17):2957-67. Epub 2005 Aug 18. PMID:16107880

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2agq.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 2AGQ CSU: Contacts of Structural Units for 2AGQ Likely Quarternary Molecular Structure file(s) for 2AGQ Structure Factors (467 Kb) Retrieve 2AGQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AGQ from S2C, [Save to disk] Re-refined 2agq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AGQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AGQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AGQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2agq_A] [2agq] [2agq_B] [2agq_C] SWISS-PROT database: [Q97W02] Domain organization of [DPO42_SULSO] by SWISSPFAM

Other resources with information on 2AGQ

Community annotation for 2AGQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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