2AGX Oxidoreductase date Jul 27, 2005
title Crystal Structure Of The Schiff Base Intermediate In The Reductive Half-Reaction Of Aromatic Amine Dehydrogenase (Aadh) With Tryptamine. P212121 Form
authors L.Masgrau, A.Roujeinikova, L.O.Johannissen, P.Hothi, J.Basran, K.E.Ranaghan, A.J.Mulholland, M.J.Sutcliffe, N.S.Scrutton, D.Leys
compound source
Molecule: Aromatic Amine Dehydrogenase
Chain: D, H
Fragment: Residues 48-182
Ec: 1.4.99.4
Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: Ifo 14479

Molecule: Aromatic Amine Dehydrogenase
Chain: A, B
Fragment: Residues 73-433
Ec: 1.4.99.4

Organism_scientific: Alcaligenes Faecalis
Organism_taxid: 511
Strain: Ifo 14479
symmetry Space Group: P 21 21 21
R_factor 0.159 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.372 96.194 120.321 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand TRQ, TSH enzyme Oxidoreductase E.C.1.4.99.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


H, D


Primary referenceAtomic description of an enzyme reaction dominated by proton tunneling., Masgrau L, Roujeinikova A, Johannissen LO, Hothi P, Basran J, Ranaghan KE, Mulholland AJ, Sutcliffe MJ, Scrutton NS, Leys D, Science. 2006 Apr 14;312(5771):237-41. PMID:16614214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (2agx.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 2AGX
  • CSU: Contacts of Structural Units for 2AGX
  • Likely Quarternary Molecular Structure file(s) for 2AGX
  • Structure Factors (407 Kb)
  • Retrieve 2AGX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AGX from S2C, [Save to disk]
  • Re-refined 2agx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AGX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AGX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AGX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2agx_D] [2agx_B] [2agx_H] [2agx] [2agx_A]
  • SWISS-PROT database: [P84887] [P84888]
  • Domain organization of [AAUA_ALCFA] [AAUB_ALCFA] by SWISSPFAM
  • Other resources with information on 2AGX
  • Community annotation for 2AGX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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