2AH2 Hydrolase date Jul 27, 2005
title Trypanosoma Cruzi Trans-Sialidase In Complex With 2,3-Difluo Acid (Covalent Intermediate)
authors M.F.Amaya, A.G.Watts, I.Damager, A.Wehenkel, T.Nguyen, A.Buschiaz G.Paris, A.C.Frasch, S.G.Withers, P.M.Alzari
compound source
Molecule: Trans-Sialidase
Chain: A
Ec: 3.2.1.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Top10f'
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ptrchisa
symmetry Space Group: P 1 21 1
R_factor 0.099 R_Free 0.152
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.149 128.690 54.298 90.00 108.74 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand CL, FSI, GOL, IPA enzyme Hydrolase E.C.3.2.1.18 BRENDA
note 2AH2 supersedes 1S0K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the catalytic mechanism of Trypanosoma cruzi trans-sialidase., Amaya MF, Watts AG, Damager I, Wehenkel A, Nguyen T, Buschiazzo A, Paris G, Frasch AC, Withers SG, Alzari PM, Structure (Camb) 2004 May;12(5):775-84. PMID:15130470
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (243 Kb) [Save to disk]
  • Biological Unit Coordinates (2ah2.pdb1.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 2AH2
  • CSU: Contacts of Structural Units for 2AH2
  • Likely Quarternary Molecular Structure file(s) for 2AH2
  • Structure Factors (661 Kb)
  • Retrieve 2AH2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AH2 from S2C, [Save to disk]
  • Re-refined 2ah2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AH2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AH2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AH2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ah2] [2ah2_A]
  • SWISS-PROT database: [Q26966]
  • Domain organization of [Q26966_TRYCR] by SWISSPFAM
  • Other resources with information on 2AH2
  • Community annotation for 2AH2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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