2AIJ Hydrolase Activator,Protein Binding date Jul 29, 2005
title Formylglycine Generating Enzyme C336s Mutant Covalently Boun Substrate Peptide Ctpsr
authors D.Roeser, M.G.Rudolph
compound source
Molecule: Sulfatase Modifying Factor 1
Chain: X
Fragment: Residues 86-371
Synonym: C-Alpha-Formyglycine- Generating Enzyme 1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Ht1080
Expression_system_cell: Fibrosarcoma Cells

Molecule: Ctpsr Peptide From Arylsulfatase A
Chain: P
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: P 21 21 2
R_factor 0.144 R_Free 0.178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.640 109.592 43.456 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CA, CL, NAG enzyme
Primary referenceA general binding mechanism for all human sulfatases by the formylglycine-generating enzyme., Roeser D, Preusser-Kunze A, Schmidt B, Gasow K, Wittmann JG, Dierks T, von Figura K, Rudolph MG, Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):81-6. Epub 2005 Dec 20. PMID:16368756
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2aij.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 2AIJ
  • CSU: Contacts of Structural Units for 2AIJ
  • Likely Quarternary Molecular Structure file(s) for 2AIJ
  • Structure Factors (295 Kb)
  • Retrieve 2AIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AIJ from S2C, [Save to disk]
  • Re-refined 2aij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AIJ, from MSDmotif at EBI
  • Fold representative 2aij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aij_P] [2aij_X] [2aij]
  • SWISS-PROT database: [P15289] [Q8NBK3]
  • Domain organization of [ARSA_HUMAN] [SUMF1_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2AIJ with the sequences similar proteins can be viewed for 2AIJ's classification [ARSA_HUMAN] [SUMF1_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ARSA_HUMAN] [SUMF1_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2AIJ
  • Community annotation for 2AIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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