2AJQ	Transferase,Transcription Dna	date	Aug 02, 2005
title	Structure Of Replicative Dna Polymerase Provides Insigts Int Mechanisms For Processivity, Frameshifting And Editing
authors	L.Brieba, T.Ellenberger
compound		source
Molecule: Dna Primer Chain: P, X Engineered: Yes		Synthetic: Yes
Molecule: Dna Template Chain: T, Z Engineered: Yes		Synthetic: Yes
Molecule: T7 Dna Polymerase Chain: A, F Ec: 2.7.7.7 Engineered: Yes Mutation: Yes		Organism_scientific: Enterobacteria Phage T7 Organism_taxid: 10760 Gene: 5 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plys S Expression_system_vector_type: Pet-Like Expression_system_plasmid: Pgp5 Other_details: Protein Induced At An Od_600 Of 0.5 By Addit 0.5 Mm Iptg For 4 Hours At 37c;
Molecule: Thioredoxin 1 Chain: B, I Synonym: Trx1; Trx Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Trxa, Fipa, Tsnc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Plys S Expression_system_vector_type: Pet-Like Expression_system_plasmid: P-Trx Other_details: Protein Induced At An Od_600 Of 0.5 By Addit 0.5 Mm Iptg For 4 Hours At 37c
symmetry	Space Group: C 2 2 21	R_factor 0.233 R_Free 0.284
crystal cell	length a length b length c angle alpha angle beta angle gamma 168.312 169.235 179.788 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	2DT	enzyme	Transferase E.C.2.7.7.7 BRENDA
Gene Ontology	Chain Function Process Component F, A nuclease activity exonuclease activity 3'-5' exonuclease activity I, B DNA polymerase processivity ...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk] Biological Unit Coordinates (2ajq.pdb1.gz) 148 Kb Biological Unit Coordinates (2ajq.pdb2.gz) 148 Kb LPC: Ligand-Protein Contacts for 2AJQ CSU: Contacts of Structural Units for 2AJQ Likely Quarternary Molecular Structure file(s) for 2AJQ Structure Factors (845 Kb) Retrieve 2AJQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AJQ from S2C, [Save to disk] Re-refined 2ajq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AJQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AJQ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AJQ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ajq] [2ajq_Z] [2ajq_P] [2ajq_I] [2ajq_A] [2ajq_T] [2ajq_X] [2ajq_F] [2ajq_B] SWISS-PROT database: [P00581] [P0AA25] Domain organization of [DPOL_BPT7] [THIO_ECOLI] by SWISSPFAM Domain found in 2AJQ: [POLAc ] by SMART

Other resources with information on 2AJQ

Community annotation for 2AJQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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