2AKM Lyase date Aug 03, 2005
title Fluoride Inhibition Of Enolase: Crystal Structure Of The Inhibitory Complex
authors J.Qin, G.Chai, J.M.Brewer, L.L.Lovelace
compound source
Molecule: Gamma Enolase
Chain: A, B
Synonym: 2-Phospho-D-Glycerate Hydro-Lyase; Neural Enolase; Neuron-Specific Enolase; Nse; Enolase 2;
Ec: 4.2.1.11
Engineered: Yes
Other_details: Inhibitory Complex
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eno2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 2
R_factor 0.211 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.739 119.692 68.299 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand MG, PO4, TRS enzyme Lyase E.C.4.2.1.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFluoride inhibition of enolase: crystal structure and thermodynamics., Qin J, Chai G, Brewer JM, Lovelace LL, Lebioda L, Biochemistry. 2006 Jan 24;45(3):793-800. PMID:16411755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (2akm.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 2AKM
  • CSU: Contacts of Structural Units for 2AKM
  • Likely Quarternary Molecular Structure file(s) for 2AKM
  • Structure Factors (435 Kb)
  • Retrieve 2AKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AKM from S2C, [Save to disk]
  • Re-refined 2akm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AKM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AKM, from MSDmotif at EBI
  • Fold representative 2akm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2akm_B] [2akm] [2akm_A]
  • SWISS-PROT database: [P09104]
  • Domain organization of [ENOG_HUMAN] by SWISSPFAM
  • Domains found in 2AKM: [Enolase_C] [Enolase_N ] by SMART
  • Other resources with information on 2AKM
  • Community annotation for 2AKM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science