2AOB Transferase date Aug 12, 2005
title Crystal Structures Of A High-Affinity Macrocyclic Peptide Mi Complex With The Grb2 Sh2 Domain
authors J.Phan, Z.D.Shi, T.R.Burke, D.S.Waugh
compound source
Molecule: Growth Factor Receptor-Bound Protein 2
Chain: A, B, C, D
Fragment: Sh2 (Residues 55 - 153)
Synonym: Grb2 Adapter Protein, Sh2sh3 Adapter Grb2, Ash Pr
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grb2, Ash
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.232 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.817 106.191 102.083 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand S1S enzyme
Primary referenceCrystal Structures of a High-affinity Macrocyclic Peptide Mimetic in Complex with the Grb2 SH2 Domain., Phan J, Shi ZD, Burke TR Jr, Waugh DS, J Mol Biol 2005 Oct 14;353(1):104-15. PMID:16165154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (2aob.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (2aob.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (2aob.pdb3.gz) 24 Kb
  • Biological Unit Coordinates (2aob.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (2aob.pdb5.gz) 41 Kb
  • Biological Unit Coordinates (2aob.pdb6.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 2AOB
  • CSU: Contacts of Structural Units for 2AOB
  • Likely Quarternary Molecular Structure file(s) for 2AOB
  • Structure Factors (339 Kb)
  • Retrieve 2AOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AOB from S2C, [Save to disk]
  • Re-refined 2aob structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AOB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AOB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aob_A] [2aob_B] [2aob_C] [2aob] [2aob_D]
  • SWISS-PROT database: [P62993]
  • Domain organization of [GRB2_HUMAN] by SWISSPFAM
  • Domain found in 2AOB: [SH2 ] by SMART
    • Other resources with information on 2AOB
  • Community annotation for 2AOB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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