2AQ0 Dna Repair, Hydrolase date Aug 17, 2005
title Solution Structure Of The Human Homodimeric Dna Repair Prote
authors D.Das, K.Tripsianes, G.Folkers, N.G.Jaspers, J.H.Hoeijmakers, R.K R.Boelens
compound source
Molecule: Dna Repair Endonuclease Xpf
Chain: A, B
Fragment: Residues 823-905
Synonym: Dna Excision Repair Protein Ercc-4; Dna-Repair Pro Complementing Xp-F Cell; Xeroderma Pigmentosum Group F Comp Protein;
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ercc4, Ercc11, Xpf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Primary referenceThe HhH domain of the human DNA repair protein XPF forms stable homodimers., Das D, Tripsianes K, Jaspers NG, Hoeijmakers JH, Kaptein R, Boelens R, Folkers GE, Proteins. 2008 Mar;70(4):1551-63. PMID:17912758
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (864 Kb) [Save to disk]
  • Biological Unit Coordinates (2aq0.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 2AQ0
  • Retrieve 2AQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AQ0 from S2C, [Save to disk]
    • View 2AQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AQ0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AQ0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aq0_A] [2aq0] [2aq0_B]
  • SWISS-PROT database: [Q92889]
  • Domain organization of [XPF_HUMAN] by SWISSPFAM
    • Other resources with information on 2AQ0
  • Community annotation for 2AQ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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