2AQ4 Transferase date Aug 17, 2005
title Ternary Complex Of The Catalytic Core Of Rev1 With Dna And D
authors D.T.Nair, R.E.Johnson, L.Prakash, S.Prakash, A.K.Aggarwal
compound source
Molecule: 5'-D(Aptpcpcptpcpcpcpcptpapc)-3'
Chain: P
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tpapapgpgptpapgpgpgpgpapgpgpa
Chain: T
Engineered: Yes

Synthetic: Yes

Molecule: Dna Repair Protein Rev1
Chain: A
Fragment: Catalytic Core
Ec: 2.7.7.-
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rev1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj5464
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbj954
symmetry Space Group: C 2 2 21
R_factor 0.197 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
177.320 200.906 55.586 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.32 Å
ligand DCP, DOC, MG enzyme Transferase E.C.2.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRev1 employs a novel mechanism of DNA synthesis using a protein template., Nair DT, Johnson RE, Prakash L, Prakash S, Aggarwal AK, Science. 2005 Sep 30;309(5744):2219-22. PMID:16195463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (2aq4.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 2AQ4
  • CSU: Contacts of Structural Units for 2AQ4
  • Likely Quarternary Molecular Structure file(s) for 2AQ4
  • Structure Factors (651 Kb)
  • Retrieve 2AQ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AQ4 from S2C, [Save to disk]
  • Re-refined 2aq4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AQ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AQ4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AQ4, from MSDmotif at EBI
  • Fold representative 2aq4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aq4_A] [2aq4] [2aq4_P] [2aq4_T]
  • SWISS-PROT database: [P12689]
  • Domain organization of [REV1_YEAST] by SWISSPFAM
  • Other resources with information on 2AQ4
  • Community annotation for 2AQ4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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