2ARY	Hydrolase	date	Aug 22, 2005
title	Catalytic Domain Of Human Calpain-1
authors	J.R.Walker, T.Davis, V.Lunin, E.M.Newman, F.Mackenzie, J.Weigelt, M.Sundstrom, C.Arrowsmith, A.Edwards, A.Bochkarev, S.Dhe-Pagano Structural Genomics Consortium (Sgc)
compound		source
Molecule: Calpain-1 Catalytic Subunit Chain: A, B Fragment: Catalytic Domain, Residues 33-354 Synonym: Calpain-1 Large Subunit, Calcium-Activated Neutral Proteinase 1, Canp 1, Calpain Mu-Type, Mucanp, Micromolar-C Ec: 3.4.22.52 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Capn1, Canpl1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28-Lic
symmetry	Space Group: P 61 2 2	R_factor 0.220 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.534 90.534 433.102 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	BME, CA	enzyme	Hydrolase E.C.3.4.22.52 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	The Crystal Structures of Human Calpains 1 and 9 Imply Diverse Mechanisms of Action and Auto-inhibition., Davis TL, Walker JR, Finerty PJ Jr, Mackenzie F, Newman EM, Dhe-Paganon S, J Mol Biol. 2006 Nov 14;. PMID:17157313

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (2ary.pdb1.gz) 55 Kb Biological Unit Coordinates (2ary.pdb2.gz) 56 Kb LPC: Ligand-Protein Contacts for 2ARY CSU: Contacts of Structural Units for 2ARY Likely Quarternary Molecular Structure file(s) for 2ARY Structure Factors (321 Kb) Retrieve 2ARY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ARY from S2C, [Save to disk] Re-refined 2ary structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ARY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ARY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ARY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ary_B] [2ary] [2ary_A] SWISS-PROT database: [P07384] Domain organization of [CAN1_HUMAN] by SWISSPFAM Domain found in 2ARY: [CysPc ] by SMART

Other resources with information on 2ARY

Community annotation for 2ARY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---