2AS5 Transcription Dna date Aug 22, 2005
title Structure Of The Dna Binding Domains Of Nfat And Foxp2 Bound Specifically To Dna.
authors Y.Wu, J.C.Stroud, M.Borde, D.L.Bates, L.Guo, A.Han, A.Rao, L.Chen
compound source
Molecule: 5'- D(Tptpapgpgpapapapaptptptpgptptptpcpaptp Apgp)-3';
Chain: A, C
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis

Molecule: 5'- D(Apapcptpaptpgpapapapcpapapaptptptptpcp Cptp)-3';
Chain: B, D
Engineered: Yes

Synthetic: Yes

Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic 2;
Chain: N, M
Fragment: Nfat1 Dna Binding Domain
Synonym: T Cell Transcription Factor Nfat1, Nfat Pre- Existing Subunit, Nf-Atp;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfatc2, Nfat1, Nfatp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plm1

Molecule: Forkhead Box Protein P2
Chain: F, G
Fragment: Foxp2 Dna Binding Domain
Synonym: Cag Repeat Protein 44, Trinucleotide Repeat- Containing Gene 10 Protein;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-30 Lic
symmetry Space Group: P 1 21 1
R_factor 0.238 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.455 157.447 67.666 90.00 118.67 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MG enzyme
Primary referenceFOXP3 Controls Regulatory T Cell Function through Cooperation with NFAT., Wu Y, Borde M, Heissmeyer V, Feuerer M, Lapan AD, Stroud JC, Bates DL, Guo L, Han A, Ziegler SF, Mathis D, Benoist C, Chen L, Rao A, Cell. 2006 Jul 28;126(2):375-87. PMID:16873067
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (2as5.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (2as5.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 2AS5
  • CSU: Contacts of Structural Units for 2AS5
  • Likely Quarternary Molecular Structure file(s) for 2AS5
  • Structure Factors (472 Kb)
  • Retrieve 2AS5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AS5 from S2C, [Save to disk]
  • Re-refined 2as5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AS5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AS5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AS5, from MSDmotif at EBI
  • Fold representative 2as5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2as5_B] [2as5] [2as5_D] [2as5_G] [2as5_A] [2as5_C] [2as5_F] [2as5_N] [2as5_M]
  • SWISS-PROT database: [O15409] [Q13469]
  • Domain organization of [FOXP2_HUMAN] [NFAC2_HUMAN] by SWISSPFAM
  • Domains found in 2AS5: [FH] [IPT ] by SMART
  • Other resources with information on 2AS5
  • Community annotation for 2AS5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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