2ASU Hydrolase date Aug 24, 2005
title Crystal Structure Of The Beta-Chain Of Hgflmsp
authors F.Carafoli, D.Y.Chirgadze, T.L.Blundell, E.Gherardi
compound source
Molecule: Hepatocyte Growth Factor-Like Protein
Chain: A
Fragment: Alpha-Chain
Synonym: Macrophage Stimulatory Protein, Msp, Macrophage St Protein;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mst1, Hgfl
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_strain: Ns0
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pa71d

Molecule: Hepatocyte Growth Factor-Like Protein
Chain: B
Fragment: Beta-Chain
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mst1, Hgfl
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_strain: Ns0
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pa71d
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.676 75.848 47.973 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceCrystal structure of the beta-chain of human hepatocyte growth factor-like/macrophage stimulating protein., Carafoli F, Chirgadze DY, Blundell TL, Gherardi E, FEBS J. 2005 Nov;272(22):5799-807. PMID:16279944
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (2asu.pdb1.gz) 38 Kb
  • CSU: Contacts of Structural Units for 2ASU
  • Likely Quarternary Molecular Structure file(s) for 2ASU
  • Structure Factors (173 Kb)
  • Retrieve 2ASU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ASU from S2C, [Save to disk]
  • Re-refined 2asu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ASU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ASU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ASU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2asu_A] [2asu_B] [2asu]
  • SWISS-PROT database: [P26927]
  • Domain organization of [HGFL_HUMAN] by SWISSPFAM
  • Domain found in 2ASU: [Tryp_SPc ] by SMART
  • Other resources with information on 2ASU
  • Community annotation for 2ASU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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