2ATA Apoptosis Dna date Aug 24, 2005
title Structural Basis Of Dna Recognition By P53 Tetramers (Complex II)
authors M.Kitayner, H.Rozenberg, N.Kessler, D.Rabinovich, Z.Shakked
compound source
Molecule: 5'-D(Apapgpgpcpaptpgpcpcptpt)-3'
Chain: E, F, G, H
Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Engineered: Yes
Synthetic: Yes

Molecule: Cellular Tumor Antigen P53
Chain: A, B, C, D
Fragment: Residues 94-293
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet27b
symmetry Space Group: P 1
R_factor 0.145 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.649 57.998 77.983 83.35 87.55 73.50
method X-Ray Diffractionresolution 2.20 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of DNA recognition by p53 tetramers., Kitayner M, Rozenberg H, Kessler N, Rabinovich D, Shaulov L, Haran TE, Shakked Z, Mol Cell. 2006 Jun 23;22(6):741-53. PMID:16793544
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (2ata.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 2ATA
  • CSU: Contacts of Structural Units for 2ATA
  • Likely Quarternary Molecular Structure file(s) for 2ATA
  • Structure Factors (330 Kb)
  • Retrieve 2ATA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ATA from S2C, [Save to disk]
  • Re-refined 2ata structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ATA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ATA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ATA, from MSDmotif at EBI
  • Fold representative 2ata from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ata_H] [2ata_A] [2ata_B] [2ata_G] [2ata_C] [2ata] [2ata_D] [2ata_F] [2ata_E]
  • SWISS-PROT database: [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [P53_HUMAN] by SWISSPFAM
  • Other resources with information on 2ATA
  • Community annotation for 2ATA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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