2AUB Hydrolase date Aug 27, 2005
title Lysozyme Structure Derived From Thin-Film-Based Crystals
authors E.Pechkova, V.Sivozhelezov, G.Tropiano, S.Fiordoro, C.Nicolini
compound source
Molecule: Lysozyme C
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, Gal D Iv;
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 43 21 2
R_factor 0.208 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.210 79.210 37.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceComparison of lysozyme structures derived from thin-film-based and classical crystals., Pechkova E, Sivozhelezov V, Tropiano G, Fiordoro S, Nicolini C, Acta Crystallogr D Biol Crystallogr 2005 Jun;61(Pt 6):803-8. Epub 2005 May, 26. PMID:15930644
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (2aub.pdb1.gz) 22 Kb
  • CSU: Contacts of Structural Units for 2AUB
  • Likely Quarternary Molecular Structure file(s) for 2AUB
  • Structure Factors (109 Kb)
  • Retrieve 2AUB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AUB from S2C, [Save to disk]
  • Re-refined 2aub structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2AUB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2AUB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2AUB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aub] [2aub_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 2AUB: [LYZ1 ] by SMART
    • Other resources with information on 2AUB
  • Community annotation for 2AUB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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