2AVG Structural Protein date Aug 30, 2005
title Nmr Structure Of Cc1 Domain From Human Cardiac Myosin Binding Protein C
authors A.Ababou, M.Gautel, M.Pfuhl
compound source
Molecule: Myosin-Binding Protein C, Cardiac-Type
Chain: A
Fragment: Cc1 Domain
Synonym: Cardiac Mybp-C, C-Protein, Cardiac Muscle Isoform
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-8a
methodSolution NMR
Primary referenceMyosin binding protein C positioned to play a key role in regulation of muscle contraction: structure and interactions of domain C1., Ababou A, Rostkova E, Mistry S, Le Masurier C, Gautel M, Pfuhl M, J Mol Biol. 2008 Dec 19;384(3):615-30. Epub 2008 Oct 7. PMID:18926831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (922 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2AVG
  • Original NMR restraints for 2AVG from PDB
  • Retrieve 2AVG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AVG from S2C, [Save to disk]
    • View 2AVG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 2AVG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AVG, from MSDmotif at EBI
  • Fold representative 2avg from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2avg_A]
  • SWISS-PROT database: [Q14896]
  • Domain organization of [MYPC3_HUMAN] by SWISSPFAM
  • Domain found in 2AVG: [IG ] by SMART
  • Alignments of the sequence of 2AVG with the sequences similar proteins can be viewed for 2AVG's classification [MYPC3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MYPC3_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 2AVG
  • Community annotation for 2AVG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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