2AWP Oxidoreductase date Sep 01, 2005
title Crystal Structure Of Plasmodium Knowlesi Structure Of Iron Super-Oxide Dismutase
authors A.Dong, Y.Zhao, J.Lew, Z.Alam, M.Melone, G.Wasney, M.Vedadi, I.Koeieradzki, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, A.Bochkarev, R.Hui, M.Amani, Structural Genomics Consortium (Sgc)
compound source
Molecule: Iron Super-Oxide Dismutase
Chain: A, B
Ec: 1.15.1.1
Engineered: Yes
Organism_scientific: Plasmodium Knowlesi
Organism_taxid: 5850
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Pet28alic
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.240 79.053 88.672 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, UNX enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


  • Primary referenceGenome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms., Vedadi M, Lew J, Artz J, Amani M, Zhao Y, Dong A, Wasney GA, Gao M, Hills T, Brokx S, Qiu W, Sharma S, Diassiti A, Alam Z, Melone M, Mulichak A, Wernimont A, Bray J, Loppnau P, Plotnikova O, Newberry K, Sundararajan E, Houston S, Walker J, Tempel W, Bochkarev A, Kozieradzki I, Edwards A, Arrowsmith C, Roos D, Kain K, Hui R, Mol Biochem Parasitol. 2007 Jan;151(1):100-10. Epub 2006 Nov 13. PMID:17125854
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (2awp.pdb1.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2AWP
  • CSU: Contacts of Structural Units for 2AWP
  • Likely Quarternary Molecular Structure file(s) for 2AWP
  • Structure Factors (207 Kb)
  • Retrieve 2AWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AWP from S2C, [Save to disk]
  • Re-refined 2awp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AWP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AWP, from MSDmotif at EBI
  • Fold representative 2awp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2awp_B] [2awp] [2awp_A]
  • SWISS-PROT database: [A5JZN1] [D0VWV6]
  • Domain organization of [A5JZN1_PLAVI] [D0VWV6_PLAKN] by SWISSPFAM
  • Other resources with information on 2AWP
  • Community annotation for 2AWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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