2AYG	Transcription Dna	date	Sep 07, 2005
title	Crystal Structure Of Hpv6a E2 Dna Binding Domain Bound To An Pair Dna Target
authors	E.Hooley, R.L.Brady, K.Gaston
compound		source
Molecule: 5'-D(Gpcpapapcpcpgpapaptptpcpgpgpt -3'; Chain: C, D Engineered: Yes		Synthetic: Yes
Molecule: Regulatory Protein E2 Chain: A, B Fragment: C Terminal Domain Engineered: Yes		Organism_scientific: Human Papillomavirus Type 6a Organism_taxid: 37122 Gene: E2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Xl1-Blue Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 61	R_factor 0.203 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.449 73.449 109.237 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.10 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein., Hooley E, Fairweather V, Clarke AR, Gaston K, Brady RL, Nucleic Acids Res. 2006;34(14):3897-908. Epub 2006 Aug 12. PMID:16914454

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk] Biological Unit Coordinates (2ayg.pdb1.gz) 44 Kb CSU: Contacts of Structural Units for 2AYG Likely Quarternary Molecular Structure file(s) for 2AYG Structure Factors (91 Kb) Retrieve 2AYG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2AYG from S2C, [Save to disk] Re-refined 2ayg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2AYG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2AYG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2AYG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ayg_D] [2ayg] [2ayg_A] [2ayg_C] [2ayg_B] SWISS-PROT database: [Q84294] Domain organization of [VE2_HPV6A] by SWISSPFAM

Other resources with information on 2AYG

Community annotation for 2AYG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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