2AYK Metalloprotease date Nov 06, 1997
title Inhibitor-Free Catalytic Fragment Of Human Fibroblast Collagenase, Nmr, Minimized Average Structure
authors R.Powers, F.J.Moy
compound source
Molecule: Collagenase
Chain: A
Synonym: Mmp-1, Fibroblast Collagenase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pet-21a(+)
Expression_system_plasmid: Pnot-3a
methodSolution NMR
ligand CA, ZN enzyme Hydrolase E.C. BRENDA
related structures by homologous chain: 1BM6, 1OO9

Primary referenceHigh-resolution solution structure of the inhibitor-free catalytic fragment of human fibroblast collagenase determined by multidimensional NMR., Moy FJ, Chanda PK, Cosmi S, Pisano MR, Urbano C, Wilhelm J, Powers R, Biochemistry. 1998 Feb 10;37(6):1495-504. PMID:9484219
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2AYK
  • CSU: Contacts of Structural Units for 2AYK
  • Retrieve 2AYK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AYK from S2C, [Save to disk]
  • View 2AYK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AYK
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AYK, from MSDmotif at EBI
  • Genome occurence of 2AYK's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2ayk__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 2ayk from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ayk] [2ayk_A]
  • SWISS-PROT database: [P03956]
  • Domain organization of [MMP1_HUMAN] by SWISSPFAM
  • Domain found in 2AYK: [ZnMc ] by SMART
  • Other resources with information on 2AYK
  • Community annotation for 2AYK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 2AYK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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