2AZE Cell Cycle, Transcription date Sep 10, 2005
title Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer
authors S.M.Rubin, A.L.Gall, N.Zheng, N.P.Pavletich
compound source
Molecule: Transcription Factor Dp-1
Chain: A
Fragment: Coiled Coil And Marked Box Domains (Residues 199- 350);
Synonym: E2f Dimerization Partner 1, Drtf1-Polypeptide-1, Drtf1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tfdp1, Dp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Transcription Factor E2f1
Chain: B
Fragment: Coiled Coil And Marked Box Domains (Residues 200- 301);
Synonym: E2f-1, Retinoblastoma Binding Protein 3, Rbbp-3, Prb-Binding Protein E2f-1, Pbr3, Retinoblastoma-Associated Protein 1, Rbap-1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: E2f1, Rbbp3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Retinoblastoma-Associated Protein
Chain: C
Fragment: C-Terminal Core Domain (Residues 829-874)
Synonym: Pp110, P105-Rb, Rb
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.221 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.800 168.600 48.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
note 2AZE is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceStructure of the Rb C-terminal domain bound to E2F1-DP1: a mechanism for phosphorylation-induced E2F release., Rubin SM, Gall AL, Zheng N, Pavletich NP, Cell. 2005 Dec 16;123(6):1093-106. PMID:16360038
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2aze.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (2aze.pdb2.gz) 100 Kb
  • CSU: Contacts of Structural Units for 2AZE
  • Likely Quarternary Molecular Structure file(s) for 2AZE
  • Structure Factors (140 Kb)
  • Retrieve 2AZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2AZE from S2C, [Save to disk]
  • Re-refined 2aze structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2AZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2AZE
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2AZE, from MSDmotif at EBI
  • Fold representative 2aze from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2aze_B] [2aze] [2aze_A] [2aze_C]
  • SWISS-PROT database: [Q01094] [P06400] [Q14186]
  • Domain organization of [E2F1_HUMAN] [RB_HUMAN] [TFDP1_HUMAN] by SWISSPFAM
  • Domain found in 2AZE: [DP ] by SMART
  • Other resources with information on 2AZE
  • Community annotation for 2AZE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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