2B02 Transcription date Sep 12, 2005
title Crystal Structure Of Arnt Pas-B Domain
authors J.Lee, M.V.Botuyan, Y.Nomine, M.Ohh, J.R.Thompson, G.Mer
compound source
Molecule: Aryl Hydrocarbon Receptor Nuclear Translocator
Chain: A
Fragment: Pas-B Domain
Synonym: Arnt Protein, Dioxin Receptor, Nuclear Translocato Hypoxia-Inducible Factor 1 Beta, Hif-1 Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arnt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.187 R_Free 0.208
length a length b length c angle alpha angle beta angle gamma
55.321 61.610 76.711 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand MSE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2b02.pdb1.gz) 23 Kb
  • LPC: Ligand-Protein Contacts for 2B02
  • CSU: Contacts of Structural Units for 2B02
  • Likely Quarternary Molecular Structure file(s) for 2B02
  • Structure Factors (158 Kb)
  • Retrieve 2B02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B02 from S2C, [Save to disk]
  • Re-refined 2b02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B02, from MSDmotif at EBI
  • Fold representative 2b02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b02_A] [2b02]
  • SWISS-PROT database: [P27540]
  • Domain organization of [ARNT_HUMAN] by SWISSPFAM
  • Domains found in 2B02: [PAC] [PAS ] by SMART
  • Other resources with information on 2B02
  • Community annotation for 2B02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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