2B0D EcoRV Restriction Endonuclease/GAATTC/Ca2+ date
authors Hiller, D.A., Rodriguez, A.M., Perona, J.J.
compound source
symmetry
R_factor
R_Free 0.302
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity


  • Primary referenceNon-cognate enzyme-DNA complex: structural and kinetic analysis of EcoRV endonuclease bound to the EcoRI recognition site GAATTC., Hiller DA, Rodriguez AM, Perona JJ, J Mol Biol 2005 Nov 18;354(1):121-36. Epub 2005 Oct 3. PMID:16236314
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2b0d.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 2B0D
  • CSU: Contacts of Structural Units for 2B0D
  • Likely Quarternary Molecular Structure file(s) for 2B0D
  • Structure Factors (221 Kb)
  • Retrieve 2B0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B0D from S2C, [Save to disk]
  • Re-refined 2b0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B0D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B0D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b0d_A] [2b0d_C] [2b0d_B] [2b0d_D] [2b0d]
  • SWISS-PROT database: [P04390]
  • Domain organization of [T2E5_ECOLX] by SWISSPFAM
  • Other resources with information on 2B0D
  • Community annotation for 2B0D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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