2B1W Apoptosis date Sep 16, 2005
title Solution Structure Of The Nod1 Caspase Activating And Recrui Domain
authors F.Manon, A.Favier, J.P.Simorre, S.Cusack
compound source
Molecule: Caspase Recruitment Domain Protein 4
Chain: A
Fragment: Card
Synonym: Nod1 Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Card4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petm-11
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK., Manon F, Favier A, Nunez G, Simorre JP, Cusack S, J Mol Biol. 2007 Jan 5;365(1):160-74. Epub 2006 Sep 29. PMID:17054981
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (301 Kb) [Save to disk]
  • Biological Unit Coordinates (2b1w.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 2B1W
  • Original NMR restraints for 2B1W from PDB
  • Retrieve 2B1W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B1W from S2C, [Save to disk]
    • View 2B1W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2B1W
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B1W, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b1w_A] [2b1w]
  • SWISS-PROT database: [Q9Y239]
  • Domain organization of [NOD1_HUMAN] by SWISSPFAM
  • Domain found in 2B1W: [CARD ] by SMART
    • Other resources with information on 2B1W
  • Community annotation for 2B1W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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