2B49 Hydrolase date Sep 23, 2005
title Crystal Structure Of The Catalytic Domain Of Protein Tyrosin Phosphatase, Non-Receptor Type 3
authors E.Ugochukwu, C.Arrowsmith, A.Barr, G.Bunkoczi, S.Das, J.Debreczen A.Edwards, J.Eswaran, S.Knapp, M.Sundstrom, A.Turnbull, F.Von De J.Weigelt, Structural Genomics Consortium (Sgc)
compound source
Molecule: Protein Tyrosine Phosphatase, Non-Receptor Type 3
Chain: A
Fragment: Catalytic Domain
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ptpn3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plic-Sgc1
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.675 61.242 75.885 90.00 101.21 90.00
method X-Ray Diffractionresolution 1.54 Å
ligand
enzyme Hydrolase E.C.3.1.3.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceLarge-scale structural analysis of the classical human protein tyrosine phosphatome., Barr AJ, Ugochukwu E, Lee WH, King ON, Filippakopoulos P, Alfano I, Savitsky P, Burgess-Brown NA, Muller S, Knapp S, Cell. 2009 Jan 23;136(2):352-63. PMID:19167335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2b49.pdb1.gz) 48 Kb
  • CSU: Contacts of Structural Units for 2B49
  • Likely Quarternary Molecular Structure file(s) for 2B49
  • Structure Factors (305 Kb)
  • Retrieve 2B49 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B49 from S2C, [Save to disk]
  • Re-refined 2b49 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B49 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B49
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B49, from MSDmotif at EBI
  • Fold representative 2b49 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b49] [2b49_A]
  • SWISS-PROT database: [P26045]
  • Domain organization of [PTN3_HUMAN] by SWISSPFAM
  • Domain found in 2B49: [PTPc ] by SMART
  • Other resources with information on 2B49
  • Community annotation for 2B49 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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