2B52 Transferase date Sep 27, 2005
title Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-04
authors J.Muckelbauer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase, Cdk2
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.030 72.010 53.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.88 Å
ligand D42 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis and evaluation of indenopyrazoles as cyclin-dependent kinase inhibitors. Part 4: Heterocycles at C3., Yue EW, DiMeo SV, Higley CA, Markwalder JA, Burton CR, Benfield PA, Grafstrom RH, Cox S, Muckelbauer JK, Smallwood AM, Chen H, Chang CH, Trainor GL, Seitz SP, Bioorg Med Chem Lett 2004 Jan 19;14(2):343-6. PMID:14698155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2b52.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2B52
  • CSU: Contacts of Structural Units for 2B52
  • Structure Factors (323 Kb)
  • Retrieve 2B52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B52 from S2C, [Save to disk]
  • Re-refined 2b52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B52
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B52, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b52] [2b52_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2B52: [S_TKc ] by SMART
  • Other resources with information on 2B52
  • Community annotation for 2B52 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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