2B53 Transferase date Sep 27, 2005
title Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-23
authors J.Muckelbauer
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase, Cdk2
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector: Baculovirus
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.960 73.510 54.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand D23 enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceQuinazolines as cyclin dependent kinase inhibitors., Sielecki TM, Johnson TL, Liu J, Muckelbauer JK, Grafstrom RH, Cox S, Boylan J, Burton CR, Chen H, Smallwood A, Chang CH, Boisclair M, Benfield PA, Trainor GL, Seitz SP, Bioorg Med Chem Lett 2001 May 7;11(9):1157-60. PMID:11354366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2b53.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 2B53
  • CSU: Contacts of Structural Units for 2B53
  • Structure Factors (287 Kb)
  • Retrieve 2B53 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B53 from S2C, [Save to disk]
  • Re-refined 2b53 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B53 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B53
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B53, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b53] [2b53_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2B53: [S_TKc ] by SMART
  • Other resources with information on 2B53
  • Community annotation for 2B53 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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