2B67 Oxidoreductase date Sep 30, 2005
title Crystal Structure Of The Nitroreductase Family Protein From Streptococcus Pneumoniae Tigr4
authors Y.Kim, L.Volkart, J.Abdullah, F.Collart, A.Joachimiak, Midwest Ce Structural Genomics (Mcsg)
compound source
Molecule: Cog0778: Nitroreductase
Chain: A, B, C, D
Ec: 1.6.99.3
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 170187
Strain: Tigr4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: P 1 21 1
R_factor 0.177 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.400 80.278 103.015 90.00 100.61 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand ACY, FMN, MSE enzyme Oxidoreductase E.C.1.6.99.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • oxidoreductase activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (2b67.pdb1.gz) 76 Kb
  • Biological Unit Coordinates (2b67.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 2B67
  • CSU: Contacts of Structural Units for 2B67
  • Likely Quarternary Molecular Structure file(s) for 2B67
  • Structure Factors (646 Kb)
  • Retrieve 2B67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B67 from S2C, [Save to disk]
  • Re-refined 2b67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2B67, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b67_C] [2b67_B] [2b67] [2b67_A] [2b67_D]
  • SWISS-PROT database: [Q97S03]
  • Domain organization of [Q97S03_STRPN] by SWISSPFAM
  • Other resources with information on 2B67
  • Community annotation for 2B67 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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