2B6B Virus Receptor date Sep 30, 2005
title Cryo Em Structure Of Dengue Complexed With Crd Of Dc-Sign
authors E.Pokidysheva, Y.Zhang, A.J.Battisti, C.M.Bator-Kelly, P.R.Chipm G.Gregorio, W.A.Hendrickson, R.J.Kuhn, M.G.Rossmann
compound source
Molecule: Envelope Glycoprotein
Chain: A, B, C
Organism_scientific: Dengue Virus
Organism_taxid: 12637

Molecule: Cd209 Antigen
Chain: D
Synonym: Dendritic Cell-Specific Icam-3-Grabbing Nonintegri Sign1, Dc-Sign;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd209
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 25.00 Å
Primary referenceCryo-EM reconstruction of dengue virus in complex with the carbohydrate recognition domain of DC-SIGN., Pokidysheva E, Zhang Y, Battisti AJ, Bator-Kelly CM, Chipman PR, Xiao C, Gregorio GG, Hendrickson WA, Kuhn RJ, Rossmann MG, Cell. 2006 Feb 10;124(3):485-93. PMID:16469696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2b6b.pdb1.gz) 1670 Kb
  • CSU: Contacts of Structural Units for 2B6B
  • Likely Quarternary Molecular Structure file(s) for 2B6B
  • Retrieve 2B6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B6B from S2C, [Save to disk]
  • View 2B6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B6B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B6B, from MSDmotif at EBI
  • Fold representative 2b6b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b6b] [2b6b_B] [2b6b_A] [2b6b_D] [2b6b_C]
  • SWISS-PROT database: [Q9NNX6] [Q9WDA7]
  • Domain organization of [CD209_HUMAN] [Q9WDA7_9FLAV] by SWISSPFAM
  • Domain found in 2B6B: [CLECT ] by SMART
  • Other resources with information on 2B6B
  • Community annotation for 2B6B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science