2B8O Hydrolase Hydrolase Inhibitor date Oct 08, 2005
title Crystal Structure Of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viiasoluble Tissue Factor Complex
authors S.P.Bajaj, A.E.Schmidt, K.Padmanabhan
compound source
Molecule: Coagulation Factor Vii Light Chain
Chain: L
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7

Molecule: Coagulation Factor Vii Heavy Chain
Chain: H
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7

Molecule: Tissue Factor
Chain: T
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.280 81.110 126.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 0GJ, ACL, CA, CGU, CL, FUC, GLC, MG, NA, ZN enzyme Hydrolase E.C.3.4.21.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
H


L


T


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (2b8o.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 2B8O
  • CSU: Contacts of Structural Units for 2B8O
  • Likely Quarternary Molecular Structure file(s) for 2B8O
  • Structure Factors (173 Kb)
  • Retrieve 2B8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2B8O from S2C, [Save to disk]
  • Re-refined 2b8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2B8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2B8O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2B8O, from MSDmotif at EBI
  • Fold representative 2b8o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2b8o_T] [2b8o_L] [2b8o_H] [2b8o] [2b8o_I]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 2B8O: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Other resources with information on 2B8O
  • Community annotation for 2B8O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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