2B8O	Hydrolase Hydrolase Inhibitor	date	Oct 08, 2005
title	Crystal Structure Of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viiasoluble Tissue Factor Complex
authors	S.P.Bajaj, A.E.Schmidt, K.Padmanabhan
compound		source
Molecule: Coagulation Factor Vii Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7
Molecule: Coagulation Factor Vii Heavy Chain Chain: H Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7
Molecule: Tissue Factor Chain: T Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.280 81.110 126.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	0GJ, CA, CGU, CL, FUC, GLC, MG, NA, ZN	enzyme	Hydrolase E.C.3.4.21.21 BRENDA
Gene Ontology	Chain Function Process Component H L T

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (2b8o.pdb1.gz) 99 Kb LPC: Ligand-Protein Contacts for 2B8O CSU: Contacts of Structural Units for 2B8O Likely Quarternary Molecular Structure file(s) for 2B8O Structure Factors (173 Kb) Retrieve 2B8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2B8O from S2C, [Save to disk] Re-refined 2b8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2B8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2B8O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2B8O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b8o_T] [2b8o_L] [2b8o_H] [2b8o] [2b8o_I] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2B8O: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART

Other resources with information on 2B8O

Community annotation for 2B8O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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