2B8O	Hydrolase Hydrolase Inhibitor	date	Oct 08, 2005
title	Crystal Structure Of Glu-Gly-Arg-Chloromethyl Ketone-Factor Viiasoluble Tissue Factor Complex
authors	S.P.Bajaj, A.E.Schmidt, K.Padmanabhan
compound		source
Molecule: Coagulation Factor Vii Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7
Molecule: Coagulation Factor Vii Heavy Chain Chain: H Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7
Molecule: Tissue Factor Chain: T Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.280 81.110 126.860 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	0GJ, ACL, CA, CGU, CL, FUC, GLC, MG, NA, ZN	enzyme	Hydrolase E.C.3.4.21.21 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk] Biological Unit Coordinates (2b8o.pdb1.gz) 102 Kb LPC: Ligand-Protein Contacts for 2B8O CSU: Contacts of Structural Units for 2B8O Likely Quarternary Molecular Structure file(s) for 2B8O Structure Factors (176 Kb) Retrieve 2B8O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2B8O from S2C, [Save to disk] Re-refined 2b8o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2B8O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2B8O

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2B8O, from MSDmotif at EBI Fold representative 2b8o from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2b8o_H] [2b8o_I] [2b8o_L] [2b8o_T] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2B8O: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART Alignments of the sequence of 2B8O with the sequences similar proteins can be viewed for 2B8O's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2B8O

Community annotation for 2B8O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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