2BAW Transcription date Oct 15, 2005
title Human Nuclear Receptor-Ligand Complex 1
authors S.A.Fyffe, M.S.Alphey, L.Buetow, T.K.Smith, M.A.J.Ferguson, M.D.S F.Bjorkling, W.N.Hunter
compound source
Molecule: Peroxisome Proliferator Activated Receptor Delta
Chain: A, B
Synonym: Ppar-Delta, Ppar-Beta, Nuclear Hormone Receptor 1, Nuci;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pseta With T7 Promoter
symmetry Space Group: P 1 21 1
R_factor 0.245 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.770 94.220 96.700 90.00 97.77 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand B7G, VCA enzyme
Primary referenceReevaluation of the PPAR-beta/delta ligand binding domain model reveals why it exhibits the activated form., Fyffe SA, Alphey MS, Buetow L, Smith TK, Ferguson MA, Sorensen MD, Bjorkling F, Hunter WN, Mol Cell. 2006 Jan 6;21(1):1-2. PMID:16387648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2baw.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (2baw.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2BAW
  • CSU: Contacts of Structural Units for 2BAW
  • Likely Quarternary Molecular Structure file(s) for 2BAW
  • Structure Factors (307 Kb)
  • Retrieve 2BAW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BAW from S2C, [Save to disk]
  • Re-refined 2baw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BAW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BAW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BAW, from MSDmotif at EBI
  • Fold representative 2baw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2baw_A] [2baw_B] [2baw]
  • SWISS-PROT database: [Q03181]
  • Domain organization of [PPARD_HUMAN] by SWISSPFAM
  • Domain found in 2BAW: [HOLI ] by SMART
  • Other resources with information on 2BAW
  • Community annotation for 2BAW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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