2BBO Transport Protein date Oct 17, 2005
title Human Nbd1 With Phe508
authors H.A.Lewis, M.C.Kearins, K.Conners, X.Zhao, F.Lu, J.M.Sauder, S.Emtage
compound source
Molecule: Cystic Fibrosis Transmembrane Conductance Regulator;
Chain: A
Fragment: Residues 389-678
Synonym: Cftr, Camp-Dependent Chloride Channel
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cftr, Abcc7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril.
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b
symmetry Space Group: P 43 21 2
R_factor 0.230 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.836 57.836 141.303 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and dynamics of NBD1 from CFTR characterized using crystallography and hydrogen/deuterium exchange mass spectrometry., Lewis HA, Wang C, Zhao X, Hamuro Y, Conners K, Kearins MC, Lu F, Sauder JM, Molnar KS, Coales SJ, Maloney PC, Guggino WB, Wetmore DR, Weber PC, Hunt JF, J Mol Biol. 2010 Feb 19;396(2):406-30. Epub 2009 Nov 26. PMID:19944699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2bbo.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 2BBO
  • CSU: Contacts of Structural Units for 2BBO
  • Likely Quarternary Molecular Structure file(s) for 2BBO
  • Structure Factors (73 Kb)
  • Retrieve 2BBO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BBO from S2C, [Save to disk]
  • Re-refined 2bbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BBO, from MSDmotif at EBI
  • Fold representative 2bbo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bbo_A] [2bbo]
  • SWISS-PROT database: [P13569]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [CFTR_HUMAN] by SWISSPFAM
  • Domain found in 2BBO: [AAA ] by SMART
  • Alignments of the sequence of 2BBO with the sequences similar proteins can be viewed for 2BBO's classification [CFTR_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CFTR_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2BBO
  • Community annotation for 2BBO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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