2BBV Virus Rna date Jun 06, 1994
title The Refined Three-Dimensional Structure Of An Insect Virus A Angstroms Resolution
authors J.P.Wery, V.S.Reddy, M.V.Hosur, J.E.Johnson
compound source
Molecule: Rna (5'-R(Upcpupupapupapupcpu)-3')
Chain: N
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Black Beetle Virus Capsid Protein)
Chain: A, B, C

Organism_scientific: Black Beetle Virus
Organism_taxid: 12285
Other_details: Grown In Drosophila Melanogaster

Molecule: Protein (Black Beetle Virus Capsid Protein)
Chain: D, E, F

Organism_scientific: Black Beetle Virus
Organism_taxid: 12285
Other_details: Grown In Drosophila Melanogaster
symmetry Space Group: P 42 3 2
R_factor 0.221 R_Free NULL
length a length b length c angle alpha angle beta angle gamma
362.000 362.000 362.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand CA enzyme
F, A, D, C, E, B

Primary referenceThe refined three-dimensional structure of an insect virus at 2.8 A resolution., Wery JP, Reddy VS, Hosur MV, Johnson JE, J Mol Biol 1994 Jan 14;235(2):565-86. PMID:8289282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (2bbv.pdb1.gz) 9213 Kb
  • LPC: Ligand-Protein Contacts for 2BBV
  • CSU: Contacts of Structural Units for 2BBV
  • Likely Quarternary Molecular Structure file(s) for 2BBV
  • Retrieve 2BBV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BBV from S2C, [Save to disk]
  • View 2BBV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BBV
  • VIPERdb: visual, structural and computational analysis of 2BBV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BBV, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Genome occurence of 2BBV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bbva_, region A [Jmol] [rasmolscript] [script source]
        - Domain d2bbvb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d2bbvc_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 2bbv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bbv_C] [2bbv_B] [2bbv_D] [2bbv] [2bbv_E] [2bbv_A] [2bbv_F] [2bbv_N]
  • SWISS-PROT database: [P04329]
  • Domain organization of [COAT_BBV] by SWISSPFAM
  • Other resources with information on 2BBV
  • Community annotation for 2BBV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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