OCA Atlas for 2BDH

2BDH

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

PBZ, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, A, B

Primary reference

Crystal structures of human tissue kallikrein 4: activity modulation by a specific zinc binding site., Debela M, Magdolen V, Grimminger V, Sommerhoff C, Messerschmidt A, Huber R, Friedrich R, Bode W, Goettig P, J Mol Biol. 2006 Oct 6;362(5):1094-107. Epub 2006 Aug 3. PMID:16950394

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]

Biological Unit Coordinates (2bdh.pdb1.gz) 37 Kb

Biological Unit Coordinates (2bdh.pdb2.gz) 37 Kb

Biological Unit Coordinates (2bdh.pdb3.gz) 37 Kb

Biological Unit Coordinates (2bdh.pdb4.gz) 37 Kb

Biological Unit Coordinates (2bdh.pdb5.gz) 70 Kb

LPC: Ligand-Protein Contacts for 2BDH

CSU: Contacts of Structural Units for 2BDH

Likely Quarternary Molecular Structure file(s) for 2BDH

Structure Factors (135 Kb)

Retrieve 2BDH in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2BDH from S2C, [Save to disk]

Re-refined 2bdh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BDH in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bdh] [2bdh_] [2bdh_A] [2bdh_B] [2bdh_C] [2bdh_D]

SWISS-PROT database: [Q9Y5K2]

Domain found in 2BDH: [Tryp_SPc ] by SMART

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