2BDI	Hydrolase	date	Oct 20, 2005
title	Human Kallikrein 4 Complex With Cobalt And P-Aminobenzamidin
authors	M.Debela, W.Bode, P.Goettig, Structural Proteomics In Europe (S
compound		source
Molecule: Kallikrein-4 Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P Fragment: Human Kallikrein 4 Synonym: Prostase, Kallikrein-Like Protein 1, Klk-L1, Ename Serine Proteinase 1; Ec: 3.4.21.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Klk4, Emsp1, Prss17, Psts Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: M15[Prep4] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe30
symmetry	Space Group: P 1 21 1	R_factor 0.258 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 147.050 73.860 154.380 90.00 102.41 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	CO, PBZ	enzyme	Hydrolase E.C.3.4.21 BRENDA
Gene Ontology	Chain Function Process Component F, N, K, E, M, C, L, A, J, O, P, B, H, D, I, G
Primary reference	Crystal structures of human tissue kallikrein 4: activity modulation by a specific zinc binding site., Debela M, Magdolen V, Grimminger V, Sommerhoff C, Messerschmidt A, Huber R, Friedrich R, Bode W, Goettig P, J Mol Biol. 2006 Oct 6;362(5):1094-107. Epub 2006 Aug 3. PMID:16950394

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (555 Kb) [Save to disk] Biological Unit Coordinates (2bdi.pdb1.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb2.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb3.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb4.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb5.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb6.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb7.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb8.gz) 42 Kb Biological Unit Coordinates (2bdi.pdb9.gz) 42 Kb LPC: Ligand-Protein Contacts for 2BDI CSU: Contacts of Structural Units for 2BDI Likely Quarternary Molecular Structure file(s) for 2BDI Structure Factors (508 Kb) Retrieve 2BDI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2BDI from S2C, [Save to disk] Re-refined 2bdi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BDI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2BDI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2BDI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2bdi_L] [2bdi_A] [2bdi_H] [2bdi_] [2bdi_G] [2bdi_O] [2bdi_J] [2bdi_F] [2bdi_I] [2bdi_N] [2bdi_E] [2bdi_C] [2bdi_B] [2bdi_D] [2bdi_M] [2bdi_P] [2bdi] [2bdi_K] SWISS-PROT database: [Q9Y5K2] Domain organization of [KLK4_HUMAN] by SWISSPFAM Domain found in 2BDI: [Tryp_SPc ] by SMART

Other resources with information on 2BDI

Community annotation for 2BDI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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