OCA Atlas for 2BE5

2BE5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, TGT, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, K, B, L
D, N
F, P	bacterial sigma factor activ...
M, C
O, E

Primary reference

Structural basis for transcription inhibition by tagetitoxin., Vassylyev DG, Svetlov V, Vassylyeva MN, Perederina A, Igarashi N, Matsugaki N, Wakatsuki S, Artsimovitch I, Nat Struct Mol Biol 2005 Dec;12(12):1086-1093. Epub 2005 Nov 6. PMID:16273103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1234 Kb) [Save to disk]

Biological Unit Coordinates (2be5.pdb1.gz) 624 Kb

Biological Unit Coordinates (2be5.pdb2.gz) 615 Kb

LPC: Ligand-Protein Contacts for 2BE5

CSU: Contacts of Structural Units for 2BE5

Likely Quarternary Molecular Structure file(s) for 2BE5

Structure Factors (4574 Kb)

Retrieve 2BE5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2BE5 from S2C, [Save to disk]

Re-refined 2be5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2BE5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2be5] [2be5_A] [2be5_B] [2be5_C] [2be5_D] [2be5_E] [2be5_F] [2be5_K] [2be5_L] [2be5_M] [2be5_N] [2be5_O] [2be5_P]

SWISS-PROT database: [Q5SKW1] [Q5SHR6] [Q9Z9H6] [Q8RQE9] [Q8RQE8] [Q8RQE7]

Domains found in 2BE5: [HhH1] [RNA_pol_Rpb6] [RPOLA_N] [RPOLD ] by SMART

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