2BG1 Peptidoglycan date Dec 16, 2004
title Active Site Restructuring Regulates Ligand Recognition In Cl Penicillin-Binding Proteins (Pbps)
authors P.Macheboeuf, A.M.Di Guilmi, V.Job, T.Vernet, O.Dideberg, A.Desse
compound source
Molecule: Penicillin-Binding Protein 1b
Chain: A
Fragment: Transpeptidase Domain, Residues 101-125 And Resid 791;
Synonym: Pbp1b
Ec: 2.4.1.129
Engineered: Yes
Mutation: Yes
Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 171101
Strain: R6
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex
symmetry Space Group: C 2 2 21
R_factor 0.202 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.331 149.447 97.976 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, SO4 enzyme Transferase E.C.2.4.1.129 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceActive site restructuring regulates ligand recognition in class A penicillin-binding proteins., Macheboeuf P, Di Guilmi AM, Job V, Vernet T, Dideberg O, Dessen A, Proc Natl Acad Sci U S A. 2005 Jan 18;102(3):577-82. Epub 2005 Jan 6. PMID:15637155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2bg1.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 2BG1
  • CSU: Contacts of Structural Units for 2BG1
  • Likely Quarternary Molecular Structure file(s) for 2BG1
  • Structure Factors (425 Kb)
  • Retrieve 2BG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BG1 from S2C, [Save to disk]
  • Re-refined 2bg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BG1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BG1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bg1] [2bg1_A]
  • SWISS-PROT database: [O70038]
  • Domain organization of [O70038_STRPN] by SWISSPFAM
  • Other resources with information on 2BG1
  • Community annotation for 2BG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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