2BI8 Isomerase date Jan 20, 2005
title Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With R
authors K.Beis, V.Srikannathasan, J.H.Naismith
compound source
Molecule: Udp-Galactopyranose Mutase
Chain: A
Ec: 5.4.99.9
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: Phistev
symmetry Space Group: P 32 2 1
R_factor 0.187 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.997 85.997 100.809 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.35 Å
ligand FAD enzyme Isomerase E.C.5.4.99.9 BRENDA
related structures by homologous chain: 2BI7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of Mycobacteria tuberculosis and Klebsiella pneumoniae UDP-galactopyranose mutase in the oxidised state and Klebsiella pneumoniae UDP-galactopyranose mutase in the (active) reduced state., Beis K, Srikannathasan V, Liu H, Fullerton SW, Bamford VA, Sanders DA, Whitfield C, McNeil MR, Naismith JH, J Mol Biol. 2005 May 13;348(4):971-82. PMID:15843027
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2bi8.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 2BI8
  • CSU: Contacts of Structural Units for 2BI8
  • Likely Quarternary Molecular Structure file(s) for 2BI8
  • Structure Factors (133 Kb)
  • Retrieve 2BI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BI8 from S2C, [Save to disk]
  • Re-refined 2bi8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BI8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BI8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bi8_A] [2bi8]
  • SWISS-PROT database: [Q48485]
  • Domain organization of [GLF1_KLEPN] by SWISSPFAM
  • Other resources with information on 2BI8
  • Community annotation for 2BI8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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