2BIJ Hydrolase date Jan 21, 2005
title Crystal Structure Of The Human Protein Tyrosine Phosphatase (Step, Striatum Enriched Enriched Phosphatase)
authors A.J.Barr, J.E.Debreczeni, J.Eswaran, C.Smee, N.Burgess, O.Gileadi M.Sundstrom, C.Arrowsmith, A.Edwards, S.Knapp, F.Von Delft
compound source
Molecule: Tyrosine-Protein Phosphatase, Non-Receptor Type 5
Chain: A
Fragment: Catalytic Domain, Residues 258-539
Synonym: Human Protein Tyrosine Phosphatase Ptpn5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Brain
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: T7
Expression_system_plasmid: Plic Sgc
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.264
length a length b length c angle alpha angle beta angle gamma
51.808 64.318 101.077 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand SO4 enzyme Hydrolase E.C. BRENDA

Primary referenceCrystal structures and inhibitor identification for PTPN5, PTPRR and PTPN7: a family of human MAPK-specific protein tyrosine phosphatases., Eswaran J, von Kries JP, Marsden B, Longman E, Debreczeni JE, Ugochukwu E, Turnbull A, Lee WH, Knapp S, Barr AJ, Biochem J. 2006 May 1;395(3):483-91. PMID:16441242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2bij.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 2BIJ
  • CSU: Contacts of Structural Units for 2BIJ
  • Likely Quarternary Molecular Structure file(s) for 2BIJ
  • Structure Factors (267 Kb)
  • Retrieve 2BIJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BIJ from S2C, [Save to disk]
  • Re-refined 2bij structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2BIJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2BIJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2BIJ, from MSDmotif at EBI
  • Fold representative 2bij from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bij_A] [2bij]
  • SWISS-PROT database: [P54829]
  • Domain organization of [PTN5_HUMAN] by SWISSPFAM
  • Domain found in 2BIJ: [PTPc ] by SMART
  • Other resources with information on 2BIJ
  • Community annotation for 2BIJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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