2BJX Electron Transport date Jan 30, 1999
title Protein Disulfide Isomerase
authors J.Kemmink, K.Dijkstra, M.Mariani, R.M.Scheek, E.Penka, M.Nilges, N
compound source
Molecule: Protein (Protein Disulfide Isomerase)
Chain: A
Fragment: B Domain
Ec: 5.3.4.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Bl21 (De3)
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pet12a
methodSolution NMR
ligand
enzyme Isomerase E.C.5.3.4.1 BRENDA
Primary referenceThe structure in solution of the b domain of protein disulfide isomerase., Kemmink J, Dijkstra K, Mariani M, Scheek RM, Penka E, Nilges M, Darby NJ, J Biomol NMR 1999 Apr;13(4):357-68. PMID:10383197
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (650 Kb) [Save to disk]
  • Biological Unit Coordinates (2bjx.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2BJX
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 2BJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2BJX from S2C, [Save to disk]
    • View 2BJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2BJX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2BJX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2bjxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2bjx] [2bjx_A]
  • SWISS-PROT database: [P07237]
  • Domain organization of [PDIA1_HUMAN] by SWISSPFAM
    • Other resources with information on 2BJX
  • Community annotation for 2BJX at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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